Package: adwave 1.4
adwave: Wavelet Analysis of Genomic Data from Admixed Populations
Implements wavelet-based approaches for describing population admixture. Principal Components Analysis (PCA) is used to define the population structure and produce a localized admixture signal for each individual. Wavelet summaries of the PCA output describe variation present in the data and can be related to population-level demographic processes. For more details, see J Sanderson, H Sudoyo, TM Karafet, MF Hammer and MP Cox. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481 <doi:10.1534/genetics.115.176842>.
Authors:
adwave_1.4.tar.gz
adwave_1.4.zip(r-4.7)adwave_1.4.zip(r-4.6)adwave_1.4.zip(r-4.5)
adwave_1.4.tgz(r-4.6-any)adwave_1.4.tgz(r-4.5-any)
adwave_1.4.tar.gz(r-4.7-any)adwave_1.4.tar.gz(r-4.6-any)
adwave_1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
adwave/json (API)
| # Install 'adwave' in R: |
| install.packages('adwave', repos = c('https://mpcox.r-universe.dev', 'https://cloud.r-project.org')) |
- admix - Simulated Admixed Population Data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:6371de9cc0. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 98 | ||
| source / vignettes | OK | 160 | ||
| linux-release-x86_64 | OK | 102 | ||
| macos-release-arm64 | OK | 164 | ||
| macos-oldrel-arm64 | OK | 149 | ||
| windows-devel | OK | 93 | ||
| windows-release | OK | 57 | ||
| windows-oldrel | OK | 60 | ||
| wasm-release | OK | 101 |
Exports:plotsignalsignalwavesum
Dependencies:multitaperwaveslim
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Simulated Admixed Population Data | admix |
| Plot Localized Admixture Signals | plotsignal |
| Compute Localized Admixture Signals | signal |
| Wavelet Summaries of Localized Admixture Signals | wavesum |
