Package: adwave 1.3

adwave: Wavelet Analysis of Genomic Data from Admixed Populations

Implements wavelet-based approaches for describing population admixture. Principal Components Analysis (PCA) is used to define the population structure and produce a localized admixture signal for each individual. Wavelet summaries of the PCA output describe variation present in the data and can be related to population-level demographic processes. For more details, see J Sanderson, H Sudoyo, TM Karafet, MF Hammer and MP Cox. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481 <doi:10.1534/genetics.115.176842>.

Authors:Jean Sanderson

adwave_1.3.tar.gz
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adwave_1.3.tgz(r-4.4-any)adwave_1.3.tgz(r-4.3-any)
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adwave.pdf |adwave.html
adwave/json (API)

# Install 'adwave' in R:
install.packages('adwave', repos = c('https://mpcox.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • admix - Simulated Admixed Population Data

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 stars 4 scripts 257 downloads 3 exports 2 dependencies

Last updated 7 years agofrom:4eb5e690bc. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winOKNov 14 2024
R-4.5-linuxOKNov 14 2024
R-4.4-winOKNov 14 2024
R-4.4-macOKNov 14 2024
R-4.3-winOKNov 14 2024
R-4.3-macOKNov 14 2024

Exports:plotsignalsignalwavesum

Dependencies:multitaperwaveslim